This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision | ||
wiki:autolit:admin:configure [2023/11/10 23:30] kholub |
wiki:autolit:admin:configure [2024/09/23 11:54] (current) jthurnham [Nest Access] |
||
---|---|---|---|
Line 3: | Line 3: | ||
The Settings page allows you to create and edit a nest description and nest protocol, as well as manage User Keywords. **Only the Owner and Admins of a nest** can view its Settings page. | The Settings page allows you to create and edit a nest description and nest protocol, as well as manage User Keywords. **Only the Owner and Admins of a nest** can view its Settings page. | ||
===== Navigate to the Settings Page ===== | ===== Navigate to the Settings Page ===== | ||
- | |||
- | {{: | ||
The Settings page is found in the top left of the page, underneath Nest Home and Activity. This link will only appear to the Owner and Admins in the nest; Settings are hidden from Users. | The Settings page is found in the top left of the page, underneath Nest Home and Activity. This link will only appear to the Owner and Admins in the nest; Settings are hidden from Users. | ||
- | 1. Add and Manage Admins, Users, and Organizations | + | |
+ | ===== 1. Add and Manage Admins, Users, and Organizations | ||
Add or remove User and/or Admin privileges for individuals and access and/or Ownership for Organizations in your specific nest. To learn how to do so for individuals or organizations, | Add or remove User and/or Admin privileges for individuals and access and/or Ownership for Organizations in your specific nest. To learn how to do so for individuals or organizations, | ||
Line 16: | Line 15: | ||
* For Organization-level Admin functions, see [[: | * For Organization-level Admin functions, see [[: | ||
* **Exception: | * **Exception: | ||
- | ---- | + | |
+ | {{ : | ||
===== 2. Synthesis ===== | ===== 2. Synthesis ===== | ||
- | From the Synthesis section, you can toggle | + | ==== Outputs Displayed ==== |
+ | |||
+ | From the Synthesis section, you can toggle | ||
+ | |||
+ | |||
+ | {{ : | ||
+ | |||
+ | By default: | ||
+ | |||
+ | * QLS and PRISMA outputs are toggled on | ||
+ | * QNS and Critical Appraisal are disabled (this is because QNS is generated from the Meta-Analytical Extraction module, and Critical Appraisal outputs are generated from the Critical Appraisal module, which are both off by default; if you’d like to toggle these on in Synthesis, first turn on and complete MA Extraction and/or Critical Appraisal further down the Settings page, then return to toggle these on in Synthesis) | ||
+ | * Manuscript and Dashboard are toggled off (currently, only Manuscript or Dashboard can be toggled on at the same time but all work is saved when toggled between; the corresponding Manuscript Editor or Dashboard Editor will then be displayed under the left-hand Synthesis menu item) | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | ==== Default QLS Display Type ==== | ||
+ | |||
+ | Choose which QLS diagram is displayed when you open the Synthesis page: Sunburst or Dendrogram. | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | By default, the Sunburst diagram is selected and displayed in Synthesis: | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | But if the Dendrogram is selected, it will be displayed in Synthesis: | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | Note: both diagrams may still be accessed at anytime (circled in red) but this Setting decides which is shown by default. | ||
- | * **Toggle on or off** Quantitative Synthesis, Qualitative Synthesis, Dashboard, Manuscript, Critical Appraisal, or PRISMA. If toggled off, that specific subsection will be greyed out in the Synthesis homepage. | + | ==== Nest Access ==== |
- | Adjust the privacy/ | + | |
* **Make a nest public.** | * **Make a nest public.** | ||
- | * **Make a nest protected.** | + | * **Make a nest protected.** |
* **Make a nest private.** | * **Make a nest private.** | ||
- | {{ :undefined:synthesis2023.png?nolink& | + | |
+ | {{ :undefined:screenshot-2024-09-05-at-12.51.06.png? | ||
+ | |||
+ | ==== Show Full Texts ==== | ||
+ | |||
+ | Abstracts are automatically shown alongside records displayed in Synthesis. If you wish to also display Full Texts, toggle this on here. Due to copyright reasons, this cannot be turned on if your nest is public, only protected or private (see above). | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | ==== Static Manuscript ==== | ||
+ | |||
+ | Upload a pdf to be shown in Synthesis when Manuscript is toggled on and empty. | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | Manuscript in Synthesis will then display the pdf as such: | ||
+ | |||
+ | {{ : | ||
---- | ---- | ||
Line 58: | Line 104: | ||
==== Screening Model ==== | ==== Screening Model ==== | ||
- | **Manual vs. Automatic: | + | **Manual vs. Automatic: |
+ | |||
+ | {{ : | ||
+ | |||
+ | For Automatic Training, head to Nest Settings--> | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | As probabilities are generated, they are displayed in place of the "Train Screening Model" | ||
+ | |||
+ | {{ : | ||
**Displayed vs. Hidden: | **Displayed vs. Hidden: | ||
Line 64: | Line 120: | ||
{{ : | {{ : | ||
- | If you want this probability to be hidden from all users, Admins, and Owners on each individual study, toggle "Hide Probabilities." | + | If you want this probability to be hidden from all users, Admins, and Owners on each individual study, toggle "Hide Probabilities." |
==== Import Existing Screening Decisions ==== | ==== Import Existing Screening Decisions ==== | ||
Line 72: | Line 128: | ||
===== 4. Tagging ===== | ===== 4. Tagging ===== | ||
- | Tagging | + | Tagging, by default, is in Form-based |
{{ : | {{ : | ||
- | In this mode, you will need to set up Questions | + | In this mode, your configured tags will be displayed as an open-ended list to be selected from in order to extract data. |
==== Tag Recommendations ==== | ==== Tag Recommendations ==== | ||
Line 109: | Line 165: | ||
===== 6. Critical Appraisal (previously named Risk of Bias) ===== | ===== 6. Critical Appraisal (previously named Risk of Bias) ===== | ||
- | Choose a Critical Appraisal system. Learn more about [[: | + | Choose a Critical Appraisal system. Learn more about [[: |
- | {{ :wiki:autolit: | + | {{ :undefined:screenshot_2024-05-22_at_12.51.27.png? |
---- | ---- | ||
Line 119: | Line 175: | ||
To avoid bias in your review where multiple reviewers are participating, | To avoid bias in your review where multiple reviewers are participating, | ||
- | **Blind Adjudication** allows you hide the reviewer's identity | + | ==== Blind Adjudication |
+ | |||
+ | Reviewers' | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | For example: | ||
Adjudicate Screening before Blinding: | Adjudicate Screening before Blinding: | ||
Line 129: | Line 191: | ||
{{ : | {{ : | ||
- | **Hiding Inclusion | + | ==== Queue Ordering ==== |
+ | |||
+ | By default, records shown in the screening queue to reviewers is in order of Ref ID. You may wish to randomize the studies shown to avoid bias or order them by inclusion probability after the model is trained. Selecting the queue order affects the remainder of studies left in the screening queue. | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | ==== Hide Probabilities ==== | ||
+ | |||
+ | When you have trained a Screening | ||
+ | |||
+ | Note: Advancement probabilities are shown in Two-Pass Screening at the Abstract level, and Inclusion probabilities are shown in Standard Screening in the singular round of screening. | ||
Screening before hiding probabilities: | Screening before hiding probabilities: | ||
Line 139: | Line 211: | ||
{{ : | {{ : | ||
- | **Hiding | + | //If Robot Screener is on, these probabilities are automatically removed.// |
+ | ==== Hide Comments | ||
+ | |||
+ | This removes the right-hand | ||
Right hand side tabs before hiding comments: | Right hand side tabs before hiding comments: | ||
Line 149: | Line 224: | ||
{{ : | {{ : | ||
- | Hiding | + | ==== Hide Tagging |
+ | |||
+ | During Screening | ||
===== 8. Copying, Renaming, or Deleting a Nest ===== | ===== 8. Copying, Renaming, or Deleting a Nest ===== | ||
Line 157: | Line 234: | ||
**Only Owners have the right to delete a nest.** | **Only Owners have the right to delete a nest.** | ||
- | {{ :wiki:autolit: | + | {{ :undefined:screenshot_2023-12-06_at_15.42.05.png? |
+ | |||
+ | <WRAP center round alert 60%> \\ Deleting a nest has wide-reaching and irreversible effects, including loss of all nest data. Proceed with caution! \\ </ | ||
---- | ---- | ||
Line 169: | Line 248: | ||
Allocation allows you to assign work in specific modules to various members of your team. Learn more about [[: | Allocation allows you to assign work in specific modules to various members of your team. Learn more about [[: | ||
- | ==== 2. Nest Backups | + | ==== 2. Nest Versions |
- | Nest Backups | + | Nest Versions |