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--- wiki:autolit:meta_analytical_extraction:configure [2023/06/27 22:08]
jthurnham [Configure Intervention and Data Elements]
+++ wiki:autolit:meta_analytical_extraction:configure [2024/05/17 13:30] (current)
jthurnham [6. If Categorical, include units and central tendency measurements]
@@ Line 9: / Line 9: @@
 **//Note:// ** Only one hierarchy can be designated as your Intervention hierarchy, but any node in your hierarchy can be configured as a Data Element. There is no requirement, however, that every tag be configured as a data element!
-==== Where does Extraction Configuration take place? ====
+==== Where does Meta-Analytical Extraction Configuration take place? ====
-Extraction can be configured "Configure Extraction" in the Extraction module. //Note:// this page is the same as the "Configure Tagging" page, but with the extraction section automatically open.
+MA Extraction can be configured by navigating to the gears icon in the MA Extraction tab.
+//Note:// this page is the same as the Configure Tagging page, but with the MA Extraction configuration section automatically open.
 Extraction configuration is integrated into tagging configuration in order to use your existing hierarchy to structure your Interventions and Data Elements.
-{{ :wiki:autolit:extraction:ex.png?nolink |}}
+{{ :undefined:maextra23.png?nolink |}}
 ===== Configuring Interventions =====
-==== 1. Open the Extraction Configuration panel ====
+==== 1. Navigate to MA Extraction Configuration panel ====
-If it isn't already, expand the "Extraction Configuration" dropdown button on the right.
+When you click on Configure Extraction, the MA Extraction Configuration panel should automatically open.
-{{ :wiki:autolit:extraction:ex2.png?nolink |}}
+{{ :undefined:screenshot_2024-05-17_at_13.45.58.png?nolink |}}
-==== 2. Toggle to Interventions ====
+==== 2. Define Intervention Hierarchy ====
-{{ :wiki:autolit:extraction:inter.png?nolink |}}
+You'll be prompted to select a root tag from the dropdown that encompasses the interventions you'd like to assign. For reference, in the below example, the Interventions root tag is highlighted in the dropdown as well as in the hierarchy.
+{{ :undefined:screenshot_2024-05-17_at_13.53.51.png?nolink |}}
 ----
-==== 3. Click on the "Interventions" Root Tag ====
+==== 3. Interventions are Assigned Purple ====
-The Intervention list on the right corresponds to all of the tags underneath the "Intervention" root tag
+Selecting a tag for interventions turns it and its child tags purple.
-{{ :wiki:autolit:extraction:inter2.png?nolink |}}
+{{ :undefined:screenshot_2024-05-17_at_14.01.38.png?nolink |}}
-**//Intervention tags can easily be changed. For example, by simply opening the Interventions tab and clicking "Implants", all tags under "Implants" are now Interventions for your Extraction.// **
+**//Intervention tags can easily be changed, simply select another tag in the dropdown. This is important to note because this is the first piece of data to be extracted in when you go to perform MA extraction. If incorrect tags are assigned as interventions in Configure MA Extraction, these incorrect Interventions options will appear under the Intervention drop-down menu instead of the "Interventions" tags. Below is what you want to see after configuring correct interventions. // **
-{{ :wiki:autolit:extraction:inter3.png?nolink |}}
+{{ :undefined:screenshot_2024-05-17_at_14.05.48.png?nolink |}}
-**//This is important to note because if you accidentally leave the incorrect hierarchy as the Interventions and then you go to extract, these incorrect Interventions options (for instance, "Implants" tags in the example above) will appear under the Intervention drop-down menu instead of the "Interventions" tags// **
-{{ :wiki:autolit:extraction:inter4.png?nolink |}}
-**//Luckily, this is easily fixed: just navigate back to the Data Elements Menu within the Tagging Hierarchy, click on the "Interventions" root tag, and viola, your Interventions are Interventions once again!// **
 ----
@@ Line 50: / Line 48: @@
 ===== Configuring Data Elements =====
-==== 1. View the Data Elements Menu ====
-Navigate to the Data Elements Menu and click "Data Elements"
+==== 1. Assign Data Elements ====
-{{ :wiki:autolit:extraction:de.png?nolink |}}
+Select a tag from the hierarchy to turn the tag into a Data Element. In the below example, Mortality was selected and can now be configured in the right hand tab.
-**//The data elements tab will show you a list of all tags, which you can select either in the list or by clicking on the tag node.//**
+{{ :undefined:screenshot_2024-05-17_at_14.10.37.png?nolink |}}
 ----
-==== 2. Turn tag into Data Element ====
-Click the plus sign next to a tag to turn the tag into a Data Element
+==== 2. Select the Data Type ====
-{{ :wiki:autolit:extraction:de2.png?nolink |}}
-----
-==== 3. Select the Data Type ====
 Continuous, Dichotomous, or Categorical (Mandatory)
-{{ :wiki:autolit:extraction:de3.png?nolink |}}
+{{ :undefined:screenshot_2024-05-17_at_14.13.19.png?nolink |}}
 **//Depending on the data type, different inputs will populate. For example, if a data element is categorical, you will be able to specify the different categories. // **
@@ Line 77: / Line 68: @@
 ----
-==== 4. Select the Expected Timepoint ====
+==== 3. Select the Expected Timepoint ====
-Baseline or Outcome - Choose the Expected Timepoint based on whether the data was collected at Baseline or as an Outcome (Mandatory)
+Baseline or Outcome - Choose the Expected Timepoint based on whether the data was collected at Baseline or as an Outcome (Mandatory).
-{{ :wiki:autolit:extraction:de4.png?nolink |}}
+{{ :undefined:screenshot_2024-05-17_at_14.14.27.png?nolink |}}
 **//If the data element can be both a Baseline and an Outcome, choose Baseline.// **
@@ Line 87: / Line 78: @@
 ----
-==== 5. Select the Direction ====
+==== 4. Select the Direction ====
-Higher Better or Lower Better (if applicable) - For example, the Data Element is "Mortality", Lower Better would most likely be appropriate
+Higher Better or Lower Better (if applicable) - For example, the Data Element is "Mortality", Lower Better would most likely be appropriate.
-{{ :wiki:autolit:extraction:de5.png?nolink |}}
+{{ :undefined:screenshot_2024-05-17_at_14.16.22.png?nolink |}}
 ----
-==== 6. Add the Measurement Units ====
-Example: Mintues, mL, kg (if applicable)
-{{ :wiki:autolit:extraction:de6.png?nolink |}}
+==== 5. If Continuous, include units and central tendency measurements ====
+Example: Minutes, mL, kg (if applicable). Mean or Median (Mandatory for continuous variables) - After choosing Mean or Median, it will also ask you about "Dispersion Measure" (SD for Mean; IQR or Range for Median).
+{{ :undefined:screenshot_2024-05-17_at_14.22.47.png?nolink |}}
+----
+==== 6. If Categorical, add custom categories ====
+{{ :undefined:screenshot_2024-05-17_at_14.29.15.png?nolink |}}
 ----
-=== 7. Add the Central Tendency Measurement ===
+==== 7. Click Save ====
-Mean or Median (Mandatory for continuous variables) - After choosing Mean or Median, it will also ask you about "Dispersion Measure" (SD for Mean; IQR or Range for Median)
+Confirm that the configuration worked based on whether the node turned gold, and move on to configure any other Data Elements of interest.
-{{ :wiki:autolit:extraction:de7.png?nolink |}}
+{{ :undefined:screenshot_2024-05-17_at_14.23.59.png?nolink |}}
-----
-==== 8. Click Save ====
+----
-Confirm that the configuration worked based on whether the node turned gold, and move on to configure any other Data Elements of interest
 ===== How many Data Elements should you create? =====

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