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wiki:autolit:meta_analytical_extraction:configure

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wiki:autolit:meta_analytical_extraction:configure [2023/06/27 22:56]
jthurnham [5. Select the Direction] 		wiki:autolit:meta_analytical_extraction:configure [2024/05/17 13:30] (current)
jthurnham [6. If Categorical, include units and central tendency measurements]
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 ==== Where does Meta-Analytical Extraction Configuration take place? ==== ==== Where does Meta-Analytical Extraction Configuration take place? ====
  
-MA Extraction can be configured "Configure Extraction" in the Extraction module. //Note:// this page is the same as the "Configure Tagging" page, but with the MA Extraction configuration section automatically open. +MA Extraction can be configured by navigating to the gears icon in the MA Extraction tab.
  
-Extraction configuration is integrated into tagging configuration in order to use your existing hierarchy to structure your Interventions and Data Elements.+//Note:// this page is the same as the Configure Tagging page, but with the MA Extraction configuration section automatically open. 
  
 +Extraction configuration is integrated into tagging configuration in order to use your existing hierarchy to structure your Interventions and Data Elements.
  
-{{ :undefined:maextractionmenu.png?nolink |}}+{{ :undefined:maextra23.png?nolink |}}
 ===== Configuring Interventions ===== ===== Configuring Interventions =====
  
-==== 1. Navigate to Extraction Configuration panel ====+==== 1. Navigate to MA Extraction Configuration panel ====
  
 When you click on Configure Extraction, the MA Extraction Configuration panel should automatically open. When you click on Configure Extraction, the MA Extraction Configuration panel should automatically open.
  
-==== 2. Toggle to Interventions ====+{{ :undefined:screenshot_2024-05-17_at_13.45.58.png?nolink |}}
  
-{{ :undefined:maex.png?nolink |}}+==== 2. Define Intervention Hierarchy ====
  
-----+You'll be prompted to select a root tag from the dropdown that encompasses the interventions you'd like to assign. For reference, in the below example, the Interventions root tag is highlighted in the dropdown as well as in the hierarchy.
  
-==== 3. Click on the "Interventions" Root Tag ====+{{ :undefined:screenshot_2024-05-17_at_13.53.51.png?nolink |}}
  
-The Intervention list on the right corresponds to all of the tags underneath the "Intervention" root tag. It will be blank until a root tag is selected.+----
  
-{{ :undefined:maex2.png?nolink |}}+==== 3. Interventions are Assigned Purple ====
  
-**//Intervention tags can easily be changed. For example, by simply opening the Interventions tab and clicking "Implants", all tags under "Implants" are now Interventions for your MA Extraction.// **+Selecting a tag for interventions turns it and its child tags purple.
  
-{{ :undefined:maex3.png?nolink |}}+{{ :undefined:screenshot_2024-05-17_at_14.01.38.png?nolink |}}
  
-**//This is important to note because if you accidentally leave the incorrect hierarchy as the Interventions and then you go to perform MA extraction, these incorrect Interventions options (for instance, "Implants" tags in the example above) will appear under the Intervention drop-down menu instead of the "Interventions" tags// **+**//Intervention tags can easily be changed, simply select another tag in the dropdown. This is important to note because this is the first piece of data to be extracted in when you go to perform MA extraction. If incorrect tags are assigned as interventions in Configure MA Extraction, these incorrect Interventions options will appear under the Intervention drop-down menu instead of the "Interventions" tags. Below is what you want to see after configuring correct interventions. // **
  
-{{ :undefined:maex4.png?nolink |}} +{{ :undefined:screenshot_2024-05-17_at_14.05.48.png?nolink |}}
- +
-**//Luckily, this is easily fixed: just navigate back to the Data Elements Menu within the Tag Hierarchy, click on the "Interventions" root tag, and viola, your Interventions are Interventions once again!// **+
  
 ---- ----
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 ===== Configuring Data Elements ===== ===== Configuring Data Elements =====
  
-==== 1. View the Data Elements Menu ==== 
  
-Navigate to the Data Elements Menu and click "Data Elements."+==== 1. Assign Data Elements ====
  
-==== 2. Turn tag into Data Element ====+Select a tag from the hierarchy to turn the tag into a Data Element. In the below example, Mortality was selected and can now be configured in the right hand tab.
  
-Click the plus sign next to a tag to turn the tag into a Data Element. +{{ :undefined:screenshot_2024-05-17_at_14.10.37.png?nolink |}}
- +
-{{ :undefined:maex5.png?nolink |}} +
- +
-**//The data elements tab will show you a list of all tags, which you can select either in the list or by clicking on the tag node.//**+
  
 ---- ----
  
  
-==== 3. Select the Data Type ====+==== 2. Select the Data Type ====
  
 Continuous, Dichotomous, or Categorical (Mandatory) Continuous, Dichotomous, or Categorical (Mandatory)
  
-{{ :undefined:maex6.png?nolink |}}+{{ :undefined:screenshot_2024-05-17_at_14.13.19.png?nolink |}}
  
 **//Depending on the data type, different inputs will populate. For example, if a data element is categorical, you will be able to specify the different categories. // ** **//Depending on the data type, different inputs will populate. For example, if a data element is categorical, you will be able to specify the different categories. // **
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 ---- ----
  
-==== 4. Select the Expected Timepoint ====+==== 3. Select the Expected Timepoint ====
  
 Baseline or Outcome - Choose the Expected Timepoint based on whether the data was collected at Baseline or as an Outcome (Mandatory). Baseline or Outcome - Choose the Expected Timepoint based on whether the data was collected at Baseline or as an Outcome (Mandatory).
  
-{{ :wiki:autolit:extraction:de4.png?nolink |}}+{{ :undefined:screenshot_2024-05-17_at_14.14.27.png?nolink |}}
  
 **//If the data element can be both a Baseline and an Outcome, choose Baseline.// ** **//If the data element can be both a Baseline and an Outcome, choose Baseline.// **
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 ---- ----
  
-==== 5. Select the Direction ====+==== 4. Select the Direction ====
  
 Higher Better or Lower Better (if applicable) - For example, the Data Element is "Mortality", Lower Better would most likely be appropriate. Higher Better or Lower Better (if applicable) - For example, the Data Element is "Mortality", Lower Better would most likely be appropriate.
  
-{{ :wiki:autolit:extraction:de5.png?nolink |}}+{{ :undefined:screenshot_2024-05-17_at_14.16.22.png?nolink |}}
  
 ---- ----
  
-==== 6. Add the Measurement Units ==== 
  
-Example: Mintues, mL, kg (if applicable) 
  
-{{ :wiki:autolit:extraction:de6.png?nolink |}}+==== 5. If Continuous, include units and central tendency measurements ====
  
-----+Example: Minutes, mL, kg (if applicable). Mean or Median (Mandatory for continuous variables) - After choosing Mean or Median, it will also ask you about "Dispersion Measure" (SD for Mean; IQR or Range for Median).
  
-=== 7. Add the Central Tendency Measurement ===+{{ :undefined:screenshot_2024-05-17_at_14.22.47.png?nolink |}}
  
-Mean or Median (Mandatory for continuous variables) - After choosing Mean or Median, it will also ask you about "Dispersion Measure" (SD for Mean; IQR or Range for Median) +---- 
- +==== 6. If Categorical, add custom categories ==== 
-{{ :wiki:autolit:extraction:de7.png?nolink |}}+{{ :undefined:screenshot_2024-05-17_at_14.29.15.png?nolink |}}
 ---- ----
  
-==== 8. Click Save ====+==== 7. Click Save ====
  
 Confirm that the configuration worked based on whether the node turned gold, and move on to configure any other Data Elements of interest. Confirm that the configuration worked based on whether the node turned gold, and move on to configure any other Data Elements of interest.
 +
 +{{ :undefined:screenshot_2024-05-17_at_14.23.59.png?nolink |}}
 +
 +----
  
 ===== How many Data Elements should you create? ===== ===== How many Data Elements should you create? =====
wiki/autolit/meta_analytical_extraction/configure.1687906604.txt.gz · Last modified: 2023/06/27 22:56 by jthurnham

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