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wiki:autolit:admin:configure [2024/05/22 11:50] jthurnham [2. Synthesis] |
wiki:autolit:admin:configure [2024/09/23 11:54] (current) jthurnham [Nest Access] |
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* **Exception: | * **Exception: | ||
- | {{ :undefined:screenshot_2023-12-06_at_15.39.12.png?nolink |}} | + | {{ :undefined:screenshot_2024-09-23_at_12.42.09.png?nolink |}} |
===== 2. Synthesis ===== | ===== 2. Synthesis ===== | ||
- | From the Synthesis section, you can toggle ' | + | ==== Outputs Displayed ==== |
- | * **Toggle | + | From the Synthesis section, you can toggle ‘on’ or ‘off’ any Synthesis |
- | Adjust | + | |
+ | |||
+ | {{ : | ||
+ | |||
+ | By default: | ||
+ | |||
+ | * QLS and PRISMA outputs are toggled | ||
+ | * QNS and Critical Appraisal are disabled (this is because QNS is generated from the Meta-Analytical Extraction module, and Critical Appraisal outputs are generated from the Critical Appraisal module, which are both off by default; if you’d like to toggle these on in Synthesis, first turn on and complete MA Extraction and/or Critical Appraisal further down the Settings page, then return to toggle these on in Synthesis) | ||
+ | * Manuscript and Dashboard are toggled off (currently, only Manuscript or Dashboard can be toggled on at the same time but all work is saved when toggled between; the corresponding Manuscript Editor or Dashboard Editor | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | ==== Default QLS Display Type ==== | ||
+ | |||
+ | Choose which QLS diagram is displayed when you open the Synthesis page: Sunburst or Dendrogram. | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | By default, the Sunburst diagram is selected and displayed in Synthesis: | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | But if the Dendrogram is selected, it will be displayed in Synthesis: | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | Note: both diagrams may still be accessed at anytime (circled in red) but this Setting decides which is shown by default. | ||
+ | |||
+ | ==== Nest Access ==== | ||
* **Make a nest public.** | * **Make a nest public.** | ||
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* **Make a nest private.** | * **Make a nest private.** | ||
- | {{ : | + | {{ : |
+ | |||
+ | ==== Show Full Texts ==== | ||
+ | |||
+ | Abstracts are automatically shown alongside records displayed in Synthesis. If you wish to also display Full Texts, toggle this on here. Due to copyright reasons, this cannot be turned on if your nest is public, only protected or private (see above). | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | ==== Static Manuscript ==== | ||
+ | |||
+ | Upload a pdf to be shown in Synthesis when Manuscript is toggled on and empty. | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | Manuscript in Synthesis will then display the pdf as such: | ||
+ | |||
+ | {{ : | ||
---- | ---- | ||
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==== Screening Model ==== | ==== Screening Model ==== | ||
- | **Manual vs. Automatic: | + | **Manual vs. Automatic: |
+ | |||
+ | {{ : | ||
+ | |||
+ | For Automatic Training, head to Nest Settings--> | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | As probabilities are generated, they are displayed in place of the "Train Screening Model" | ||
+ | |||
+ | {{ : | ||
**Displayed vs. Hidden: | **Displayed vs. Hidden: | ||
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{{ : | {{ : | ||
- | If you want this probability to be hidden from all users, Admins, and Owners on each individual study, toggle "Hide Probabilities." | + | If you want this probability to be hidden from all users, Admins, and Owners on each individual study, toggle "Hide Probabilities." |
==== Import Existing Screening Decisions ==== | ==== Import Existing Screening Decisions ==== | ||
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===== 6. Critical Appraisal (previously named Risk of Bias) ===== | ===== 6. Critical Appraisal (previously named Risk of Bias) ===== | ||
- | Choose a Critical Appraisal system. Learn more about [[: | + | Choose a Critical Appraisal system. Learn more about [[: |
- | {{ :wiki:autolit: | + | {{ :undefined:screenshot_2024-05-22_at_12.51.27.png? |
---- | ---- | ||
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To avoid bias in your review where multiple reviewers are participating, | To avoid bias in your review where multiple reviewers are participating, | ||
- | **Blind Adjudication** allows you hide the reviewer's identity | + | ==== Blind Adjudication |
+ | |||
+ | Reviewers' | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | For example: | ||
Adjudicate Screening before Blinding: | Adjudicate Screening before Blinding: | ||
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{{ : | {{ : | ||
- | **Hiding Inclusion | + | ==== Queue Ordering ==== |
+ | |||
+ | By default, records shown in the screening queue to reviewers is in order of Ref ID. You may wish to randomize the studies shown to avoid bias or order them by inclusion probability after the model is trained. Selecting the queue order affects the remainder of studies left in the screening queue. | ||
+ | |||
+ | {{ : | ||
+ | |||
+ | ==== Hide Probabilities ==== | ||
+ | |||
+ | When you have trained a Screening | ||
+ | |||
+ | Note: Advancement probabilities are shown in Two-Pass Screening at the Abstract level, and Inclusion probabilities are shown in Standard Screening in the singular round of screening. | ||
Screening before hiding probabilities: | Screening before hiding probabilities: | ||
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{{ : | {{ : | ||
- | **Hiding | + | //If Robot Screener is on, these probabilities are automatically removed.// |
+ | ==== Hide Comments | ||
+ | |||
+ | This removes the right-hand | ||
Right hand side tabs before hiding comments: | Right hand side tabs before hiding comments: | ||
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{{ : | {{ : | ||
- | Hiding | + | ==== Hide Tagging |
+ | |||
+ | During Screening | ||
===== 8. Copying, Renaming, or Deleting a Nest ===== | ===== 8. Copying, Renaming, or Deleting a Nest ===== | ||
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Allocation allows you to assign work in specific modules to various members of your team. Learn more about [[: | Allocation allows you to assign work in specific modules to various members of your team. Learn more about [[: | ||
- | ==== 2. Nest Backups | + | ==== 2. Nest Versions |
- | Nest Backups | + | Nest Versions |